Package: PCPS 1.0.8

PCPS: Principal Coordinates of Phylogenetic Structure

Set of functions for analysis of Principal Coordinates of Phylogenetic Structure (PCPS).

Authors:Vanderlei Julio Debastiani

PCPS_1.0.8.tar.gz
PCPS_1.0.8.zip(r-4.7)PCPS_1.0.8.zip(r-4.6)PCPS_1.0.8.zip(r-4.5)
PCPS_1.0.8.tgz(r-4.6-any)PCPS_1.0.8.tgz(r-4.5-any)
PCPS_1.0.8.tar.gz(r-4.7-any)PCPS_1.0.8.tar.gz(r-4.6-any)
PCPS_1.0.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PCPS/json (API)

# Install 'PCPS' in R:
install.packages('PCPS', repos = c('https://vanderleidebastiani.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vanderleidebastiani/pcps/issues

On CRAN:

Conda:

2.70 score 1 stars 9 scripts 574 downloads 25 exports 63 dependencies

Last updated from:71329266a3. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE165
source / vignettesOK168
linux-release-x86_64NOTE163
macos-release-arm64NOTE255
macos-oldrel-arm64NOTE219
windows-develNOTE127
windows-releaseNOTE108
windows-oldrelNOTE106
wasm-releaseOK117

Exports:check.formuladefine.cladeFUN.ADONISFUN.ADONIS2.globalFUN.ADONIS2.marginFUN.GLMFUN.GLS.marginalFUN.GLS.sequentialFUN.LME.marginalFUN.LME.sequentialFUN.MANTELFUN.RDAmatrix.p.nullmatrix.p.sigmutate.names.matrix.p.nullorganize.pcpspcoa.sigpcpc.curve.calcpcpspcps.curvepcps.sigscores.pcpsselect.pcpsmethodself.belongingwcmdscale.org

Dependencies:abindade4apeaskpasscliclustercpp11crayoncurldigestdplyrFDgenericsgeometrygluehmshttrjsonlitelatticelifecyclelinproglpSolvemagicmagrittrMASSMatrixmgcvmimenlmeopensslpermutephylobasepicantepillarpixmappkgconfigplyrprettyunitsprogresspurrrR6RcppRcppArmadilloRcppProgressreshape2rlangrnclRNeXMLspstringistringrSYNCSAsystibbletidyrtidyselectutf8uuidvctrsveganwithrXMLxml2

Readme and manuals

Help Manual

Help pageTopics
Internal functioncheck.formula
Define cladedefine.clade
Auxiliar function to generate sets of null P matrix or null PCPSmatrix.p.null
Association between phylogeny-weighted species composition and environmental predictorsFUN.ADONIS FUN.ADONIS2.global FUN.ADONIS2.margin FUN.GLM FUN.GLS.marginal FUN.GLS.sequential FUN.LME.marginal FUN.LME.sequential FUN.MANTEL FUN.RDA matrix.p.sig pcps.sig print.pcpssig
Internal functionmutate.names.matrix.p.null
Function for organize data for Package PCPSorganize.pcps
Significant dimensions in principal coordinate analysispcoa.sig print.pcoasig print.summarypcoasig summary.pcoasig
Principal Coordinates of Phylogenetic Structurepcps plot.pcps print.pcps print.summarypcps scores.pcps summary.pcps
Curve of phylogenetic signal at metacommunity levelpcpc.curve.calc pcps.curve plot.pcpscurve print.pcpscurve summary.pcpscurve
Internal functionselect.pcpsmethod
Degree of self belonging of speciesself.belonging
Internal function for organize the results of wcmdscale functionwcmdscale.org