{
  "_id": "6a1f207eb401979e734203cb",
  "Package": "PCPS",
  "Type": "Package",
  "Title": "Principal Coordinates of Phylogenetic Structure",
  "Version": "1.0.8",
  "Date": "2020-02-03",
  "Author": "Vanderlei Julio Debastiani",
  "Maintainer": "Vanderlei Julio Debastiani\n<vanderleidebastiani@yahoo.com.br>",
  "Description": "Set of functions for analysis of Principal Coordinates of\nPhylogenetic Structure (PCPS).",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.0",
  "Collate": "'matrix.p.sig.R' 'pcps.R' 'pcps.sig.R' 'FUN.ADONIS.R'\n'FUN.ADONIS2.global.R' 'FUN.ADONIS2.margin.R' 'FUN.GLM.R'\n'FUN.GLS.marginal.R' 'FUN.GLS.sequential.R'\n'FUN.LME.marginal.R' 'FUN.LME.sequential.R' 'FUN.MANTEL.R'\n'FUN.RDA.R' 'check.formula.R' 'define.clade.R'\n'matrix.p.null.R' 'mutate.names.matrix.p.null.R'\n'organize.pcps.R' 'pcoa.sig.R' 'pcps.curve.R'\n'pcpc.curve.calc.R' 'plot.pcps.R' 'plot.pcpscurve.R'\n'print.pcoasig.R' 'print.pcps.R' 'print.pcpscurve.R'\n'print.pcpssig.R' 'print.summarypcoasig.R'\n'print.summarypcps.R' 'scores.pcps.R' 'select.pcpsmethod.R'\n'self.belonging.R' 'summary.pcoasig.R' 'summary.pcps.R'\n'summary.pcpscurve.R' 'wcmdscale.org.R'",
  "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://vanderleidebastiani.r-universe.dev",
  "Date/Publication": "2021-02-02 19:41:08 UTC",
  "RemoteUrl": "https://github.com/vanderleidebastiani/pcps",
  "RemoteRef": "HEAD",
  "RemoteSha": "71329266a31d87faac6977c624a176edda5f85f5",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-16 07:51:35 UTC",
    "User": "root"
  },
  "MD5sum": "2b0889e47c7b7928673515092e2bc2e9",
  "_user": "vanderleidebastiani",
  "_type": "src",
  "_file": "PCPS_1.0.8.tar.gz",
  "_fileid": "3bba6c35b96daa1787014719f5b9ef4239c99c56542e5d76c5ffe3340b8839e5",
  "_filesize": 194649,
  "_sha256": "3bba6c35b96daa1787014719f5b9ef4239c99c56542e5d76c5ffe3340b8839e5",
  "_created": "2026-05-16T07:51:35.000Z",
  "_published": "2026-06-02T18:27:10.214Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79143044276,
      "time": 165,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7031751456"
    },
    {
      "job": 79143044598,
      "time": 163,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7031751206"
    },
    {
      "job": 79143044596,
      "time": 219,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7031753240"
    },
    {
      "job": 79143044772,
      "time": 255,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7031749671"
    },
    {
      "job": 79143044079,
      "time": 168,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031734471"
    },
    {
      "job": 79143043552,
      "time": 117,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7366424664"
    },
    {
      "job": 79143044203,
      "time": 127,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7031747623"
    },
    {
      "job": 79143044508,
      "time": 106,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7031745583"
    },
    {
      "job": 79143044601,
      "time": 108,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7031745651"
    }
  ],
  "_buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/vanderleidebastiani/pcps",
  "_commit": {
    "id": "71329266a31d87faac6977c624a176edda5f85f5",
    "author": "Vanderlei Debastiani <vanderleidebastiani@yahoo.com.br>",
    "committer": "Vanderlei Debastiani <vanderleidebastiani@yahoo.com.br>",
    "message": "Version 1.0.8\n",
    "time": 1612294868
  },
  "_maintainer": {
    "name": "Vanderlei Julio Debastiani",
    "email": "vanderleidebastiani@yahoo.com.br",
    "login": "vanderleidebastiani",
    "uuid": 6205983
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "SYNCSA",
      "version": ">= 1.3.4",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "picante",
      "role": "Imports"
    },
    {
      "package": "phylobase",
      "role": "Imports"
    },
    {
      "package": "vegan",
      "role": "Imports"
    },
    {
      "package": "RcppArmadillo",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "nlme",
      "role": "Imports"
    }
  ],
  "_owner": "vanderleidebastiani",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "vanderleidebastiani",
      "count": 25,
      "uuid": 6205983
    }
  ],
  "_userbio": {
    "uuid": 6205983,
    "type": "user",
    "name": "Vanderlei Debastiani"
  },
  "_downloads": {
    "count": 574,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PCPS"
  },
  "_devurl": "https://github.com/vanderleidebastiani/pcps",
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/PCPS.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/vanderleidebastiani/pcps",
  "_realowner": "vanderleidebastiani",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2014-04-30"
    },
    {
      "version": "1.0.1",
      "date": "2014-05-13"
    },
    {
      "version": "1.0.2",
      "date": "2015-01-13"
    },
    {
      "version": "1.0.3",
      "date": "2016-04-05"
    },
    {
      "version": "1.0.4",
      "date": "2018-03-23"
    },
    {
      "version": "1.0.5",
      "date": "2018-04-09"
    },
    {
      "version": "1.0.6",
      "date": "2018-05-24"
    },
    {
      "version": "1.0.7",
      "date": "2020-01-15"
    },
    {
      "version": "1.0.8",
      "date": "2025-08-23"
    }
  ],
  "_exports": [
    "check.formula",
    "define.clade",
    "FUN.ADONIS",
    "FUN.ADONIS2.global",
    "FUN.ADONIS2.margin",
    "FUN.GLM",
    "FUN.GLS.marginal",
    "FUN.GLS.sequential",
    "FUN.LME.marginal",
    "FUN.LME.sequential",
    "FUN.MANTEL",
    "FUN.RDA",
    "matrix.p.null",
    "matrix.p.sig",
    "mutate.names.matrix.p.null",
    "organize.pcps",
    "pcoa.sig",
    "pcpc.curve.calc",
    "pcps",
    "pcps.curve",
    "pcps.sig",
    "scores.pcps",
    "select.pcpsmethod",
    "self.belonging",
    "wcmdscale.org"
  ],
  "_help": [
    {
      "page": "check.formula",
      "title": "Internal function",
      "topics": [
        "check.formula"
      ]
    },
    {
      "page": "define.clade",
      "title": "Define clade",
      "topics": [
        "define.clade"
      ]
    },
    {
      "page": "matrix.p.null",
      "title": "Auxiliar function to generate sets of null P matrix or null PCPS",
      "topics": [
        "matrix.p.null"
      ]
    },
    {
      "page": "pcps.sig",
      "title": "Association between phylogeny-weighted species composition and environmental predictors",
      "topics": [
        "FUN.ADONIS",
        "FUN.ADONIS2.global",
        "FUN.ADONIS2.margin",
        "FUN.GLM",
        "FUN.GLS.marginal",
        "FUN.GLS.sequential",
        "FUN.LME.marginal",
        "FUN.LME.sequential",
        "FUN.MANTEL",
        "FUN.RDA",
        "matrix.p.sig",
        "pcps.sig",
        "print.pcpssig"
      ]
    },
    {
      "page": "mutate.names.matrix.p.null",
      "title": "Internal function",
      "topics": [
        "mutate.names.matrix.p.null"
      ]
    },
    {
      "page": "organize.pcps",
      "title": "Function for organize data for Package PCPS",
      "topics": [
        "organize.pcps"
      ]
    },
    {
      "page": "pcoa.sig",
      "title": "Significant dimensions in principal coordinate analysis",
      "topics": [
        "pcoa.sig",
        "print.pcoasig",
        "print.summarypcoasig",
        "summary.pcoasig"
      ]
    },
    {
      "page": "pcps",
      "title": "Principal Coordinates of Phylogenetic Structure",
      "topics": [
        "pcps",
        "plot.pcps",
        "print.pcps",
        "print.summarypcps",
        "scores.pcps",
        "summary.pcps"
      ]
    },
    {
      "page": "pcps.curve",
      "title": "Curve of phylogenetic signal at metacommunity level",
      "topics": [
        "pcpc.curve.calc",
        "pcps.curve",
        "plot.pcpscurve",
        "print.pcpscurve",
        "summary.pcpscurve"
      ]
    },
    {
      "page": "select.pcpsmethod",
      "title": "Internal function",
      "topics": [
        "select.pcpsmethod"
      ]
    },
    {
      "page": "self.belonging",
      "title": "Degree of self belonging of species",
      "topics": [
        "self.belonging"
      ]
    },
    {
      "page": "wcmdscale.org",
      "title": "Internal function for organize the results of wcmdscale function",
      "topics": [
        "wcmdscale.org"
      ]
    }
  ],
  "_readme": "https://github.com/vanderleidebastiani/pcps/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "ade4",
    "ape",
    "askpass",
    "cli",
    "cluster",
    "cpp11",
    "crayon",
    "curl",
    "digest",
    "dplyr",
    "FD",
    "generics",
    "geometry",
    "glue",
    "hms",
    "httr",
    "jsonlite",
    "lattice",
    "lifecycle",
    "linprog",
    "lpSolve",
    "magic",
    "magrittr",
    "MASS",
    "Matrix",
    "mgcv",
    "mime",
    "nlme",
    "openssl",
    "permute",
    "phylobase",
    "picante",
    "pillar",
    "pixmap",
    "pkgconfig",
    "plyr",
    "prettyunits",
    "progress",
    "purrr",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "RcppProgress",
    "reshape2",
    "rlang",
    "rncl",
    "RNeXML",
    "sp",
    "stringi",
    "stringr",
    "SYNCSA",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "uuid",
    "vctrs",
    "vegan",
    "withr",
    "XML",
    "xml2"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "pcps",
  "_universes": [
    "vanderleidebastiani"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.8",
      "date": "2026-05-16T07:53:58.000Z",
      "distro": "noble",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "ffdbecb5da8540be04b133eaf05322216ee1bbfa434290cdbefc63d4ccb05592",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.8",
      "date": "2026-05-16T07:53:55.000Z",
      "distro": "noble",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "8ef6b8e908af59967c504a7c47024364c047f19833696ffcbdbbf6a310e1e654",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.8",
      "date": "2026-05-16T07:54:19.000Z",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "c87a8acd362649da2259986a56fdcadbc1980f61c3767c358474671d5bdea751",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.8",
      "date": "2026-05-16T07:53:44.000Z",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "e7ad980f01e347b28cc3a27aa947d1fff64e5964e17b0d59b8f626d299da4699",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.8",
      "date": "2026-05-16T07:53:10.000Z",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "0e4e70c012fa4c2e983194220b25fbd6c9bf591e7f0797631073424267a7eac9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.8",
      "date": "2026-05-16T07:52:54.000Z",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "1180c9ddab79e77b8c72a215bd4e932206b818a44d29b8bb885bc873a850226d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.8",
      "date": "2026-05-16T07:52:56.000Z",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "a014e7a73e3fce1b9629b60d49d9d1cefb5994a976b2c66892588d8c211a5c5c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.8",
      "date": "2026-06-02T18:26:44.000Z",
      "commit": "71329266a31d87faac6977c624a176edda5f85f5",
      "fileid": "6badf0d46a3cd71cdbc5dc7af0c9241488bb6dd13bc7c2b3ff1e2b5005d228a4",
      "status": "success",
      "buildurl": "https://github.com/r-universe/vanderleidebastiani/actions/runs/25956560319"
    }
  ]
}